Manufacturing control systems must quickly react to variations of product, process specifications, fault occurrence, changes in the resources functional capabilities, and other operational demands. Besides, to gain competitive advantages, dispersed manufacturing systems must cooperate with each other. The combination of holonic control system and service-oriented architecture techniques can be effective to integrate these heterogeneous environments since the agents must also cooperate to achieve their services. Therefore, this paper introduces a service-oriented and holonic control architecture using Petri net to represent the workflow of design method itself, structure and dynamic of the entities. The modeling of an example is presented to demonstrate application at self-organization and adaptation, fault treatment, degeneration, and relatively shorter implementing time.